With todays hotfix to add 3 new achievements to increase the reward of anima from various sources I received 2 out of the 3. Denying the Drought, having all rank 2 upgrades, was not awarded to me. I did receive Sanctum Superior, having all rank 3 upgrades. After talking with a friend I am not receiving credit for this achievement which is also causing my anima rewards to also not be increased to the level of having Sanctum Superior.
Edit: I am Kyrian.