UPDATE:: They go to the socketable tab now… Duh, my bad.
Logged into Eternal and immediately found everything is once again LEGACY.
BUG: Removing gems at the jeweler the gems are GONE! Disappear and never coming back.
RETESTED: Took gems from inventory, inserted and then went to jeweler to remove them again. Once again gems are GONE!
This was a legacy item I tested on and it should NEVER take gems from you on removal.